PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00029303-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 180aa    MW: 20968.1 Da    PI: 10.077
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00029303-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind682e-2136333102
                       HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
      HSF_DNA-bind  33 eeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                       ++efa +vLp+yF hsn++SFvRQLn+YgF+k+ + +          eF ++ Fkkg+k+ll++i+r+k 
  PSME_00029303-RA   3 PREFAASVLPRYFNHSNLSSFVRQLNTYGFRKIVHGR---------CEFGNELFKKGQKHLLSHIQRRKP 63 
                       689*******************************999.........67*******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-15261IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.2E-20261IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-17361IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-18361IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-91022IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-92335IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRPREFAASV LPRYFNHSNL SSFVRQLNTY GFRKIVHGRC EFGNELFKKG QKHLLSHIQR  60
RKPSISSQTM ELAWQMEYDQ SLNPNSSSAV QDFDVPTAAP CLFEEHVILK RNNLLLLSEI  120
DRLQNICVRD FKLFIRHNTR DPPLIDMHRK IDKVSSNVSM RDVSEEISMS PPKLFGVPLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8l_H8e-1566439108Heat shock factor protein 2
5d8l_F8e-1566439108Heat shock factor protein 2
5d8l_D8e-1566439108Heat shock factor protein 2
5d8l_B8e-1566439108Heat shock factor protein 2
5d8k_B8e-1566439108Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH9WK882e-49H9WK88_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-25heat shock transcription factor B2A